PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17158
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 356aa    MW: 40688.7 Da    PI: 4.9954
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17158genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-0690113226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 k  lC ff + G+C  G +CkF+H+
  PEQU_17158  90 KSILCEFFKA-GQCAKGFKCKFSHD 113
                 6679**7777.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.15988115IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-488114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-688113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-490114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.319161199IPR000571Zinc finger, CCCH-type
SMARTSM003561.9161198IPR000571Zinc finger, CCCH-type
PfamPF165431.4E-17220303IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MPPKQQSKAE LAKKQKVVED KTFGLKNKNK SKNVQKYVQS LQQSVQPKPD PSKAAAKKKL  60
EDEKAREKEL NDLFKVAVSQ PKVPIGVDPK SILCEFFKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DQQSTETMEE WDQETLEKVV ESKRSEYNQN KPTEIVCKFF LEAVEKKQYG  180
WFWSCPNGGK DCHYRHALPP GYILKSQMKA LLEEEADKKA IEEEIEDQRG KLSSTTPMTP  240
ELFQQWKIKK VAEKEAALAA NQAERAKNDR MSGRELFLSD ASLFVDDAEA YEKYQREDSD  300
GEEKAKESKI GEPSTSKSVE EDEILAEDDD DDLDMDELNE LEATLSRTTL EIHSSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828300.10.0PREDICTED: zinc finger CCCH domain-containing protein 11
RefseqXP_010067249.10.0PREDICTED: zinc finger CCCH domain-containing protein 21
SwissprotQ0JHZ21e-175C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLW1NJV20.0W1NJV2_AMBTC; Uncharacterized protein
TrEMBLA0A059BGV80.0A0A059BGV8_EUCGR; Uncharacterized protein
STRINGPOPTR_0008s04540.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-136C3H family protein